Hi,
I am trying to run vcf-validator (vcftools) on some VCF files I obtained from TCGA. These files are tumor-normal vcf files called using Mutect2. When I try and run vcf validator I get an error:
------------------------
Summary:
6220 errors total
6220 .. column NORMAL at chr1:14677 .. FORMAT tag [QSS] expected different number of values (expected 1, found 2)
Any ideas on what is wrong and what I can do to fix it?
Thanks
I am trying to run vcf-validator (vcftools) on some VCF files I obtained from TCGA. These files are tumor-normal vcf files called using Mutect2. When I try and run vcf validator I get an error:
------------------------
Summary:
6220 errors total
6220 .. column NORMAL at chr1:14677 .. FORMAT tag [QSS] expected different number of values (expected 1, found 2)
Any ideas on what is wrong and what I can do to fix it?
Thanks