GenotypeGVCFs Runtime

Hello,

I'm running GenotypeGVCFs on 60 .g.vcf files. Each .g.vcf.file is about 4G. I had given it about 100G memory and 30 cores. It doesn't seem to like the options options -nt -nct to multi thread.

Current run time is about 4 days to complete. I think the version I am using is version 3.4-46-gbc02625.

Any suggestions on improving the processing time for the job ?

Thanks very much