Hi,
I am trying to use GATK with MTBseq and it states that you have to use v3.8 which cannot be installed by conda. I have installed using the following
"conda install -c conda-forge -c bioconda gatk"
Then I downloaded the tar file from your website and used
"gatk-register path-to-downloaded-gatk3.8"
to copy to the conda bath but the command doesn't work. I am a microbiologist so i am not very command line savvy and not sure what I am doing wrong. Any help would be great!
Cheers!
P
