These are the materials that we are presenting at the February 2017 GATK workshop in Leuven, Belgium.
| Materials | Link |
|---|---|
| DAY 1: GATK Best Practices talks | |
| Slide decks presented on Day 1 | Google Drive Folder |
| DAY 2: Germline variant discovery | |
| Variant Discovery Tutorial Worksheet (Day 2 AM) | PDF on Google Drive |
| Variant Filtering Tutorial Worksheet (Day 2 PM) | PDF on Google Drive |
| Germline Data Bundle (Day 2) | ZIP on Google Drive |
| DAY 3 AM: Somatic mutation discovery | |
| MuTect2 Tutorial Worksheet (Day 3 AM) | PDF on Google Drive |
| MuTect2 Data Bundle (Day 2) | TAR.GZ on Google Drive |
| CNV Tutorial Worksheet (Day 3 AM) | PDF on Google Drive |
| CNV Data Bundle (Day 3 AM) | ZIP on GATK website |
| DAY 3 PM: Pipelining with WDL | |
| WDL Pipelining Tutorial Worksheet (Day 3 PM) | PDF on Google Drive |
| WDL Pipelining Data Bundle (Day 2) | ZIP on Google Drive |