Hello,
I tried to run RNA-SeQC but got the following error:
RNA-SeQC v1.1.8.1 07/11/14
Creating rRNA Interval List based on given GTF annotations
Retriving contig names from reference
contig names in reference: 86
Loading GTF for Read Counting
The required transcript_id attribute was not found on line 1 pseudogene gene 11869 14412 . + . gene_id "ENSG00000223972"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene";
Can anyone please help me fix this error?
This is the command that I used:
java -jar RNA-SeQC_v1.1.8.jar -o Output -r human_g1k_v37_decoy.fasta -s sample_info.txt -t Homo_sapiens.GRCh37.75.gtf
Thank you.