Dear GATK-Team,
Thank you very much for development of GATK4 under BDS license model. This is a very great progress! I have a question about Realignment under GATK4. As far as I know, the GATK3.7-tools realignertargetcreator and indelrealigner are not ported to GATK4. Do you have some suggestions how to do local realignment without this tools? Do you know some alternativ tools? Thank your very much in advance for an answer. Kindly Regards
Alexander Maurer
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Alternatives to realignertargetcreator
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