SO I have been analysis my sequence data and try to do realignment.
After I run the cmd RealignerTargetCreator I got the interval files.
However the intervals file start with first line as:
There were no warn messages.
And when I use this interval files for realignment.
The ERROR message pop out saying:
Badly formed genome location: Contig 'There were no warn messages.' dose not match any contig.
Is there someting wrong with my process?