Quantcast
Channel: Recent Discussions — GATK-Forum
Viewing all articles
Browse latest Browse all 12345

FILTER column in vcf file from HaplotypeCaller

$
0
0

I used a cohort in running HaplotypeCaller. Some of values in the FILTER column of the resulting vcf file are ".", what does that mean?

Here is one example (not all columns included):

#CHROM  POS     ID      REF     ALT     QUAL    FILTER
22      16084134        .       A       C       152.03  .

Viewing all articles
Browse latest Browse all 12345

Trending Articles



<script src="https://jsc.adskeeper.com/r/s/rssing.com.1596347.js" async> </script>