How does the LeftAlignAndTrimVariants with --splitMultiallelics tool affects the AC, AF, AN fields and also if multiple alleles are split then on what basis it splits the PL field which helps to determine the genotype.
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How does the LeftAlignAndTrimVariants with --splitMultiallelics tool affects the AC, AF, AN fields and also if multiple alleles are split then on what basis it splits the PL field which helps to determine the genotype.