Purpose
Identify somatic short variants (SNVs + Indels) in a tumor-normal for an individual sample. Requires an appropriate Panel of Normals (PON).
Reference Implementations
| Pipeline | Summary | Notes | Github | FireCloud |
|---|---|---|---|---|
| Somatic short variants tumor-normal pair | T-N BAMs to VCF | universal |  |
TBD |
| Somatic short variants PON creation | Normal BAMs to PON | universal | placeholder | TBD |
A brand new version of these workflows is about to be released and will be made available within the next few days, along with the relevant documentation.