Hi
When I use MergeBamAlignment
, I encountered the following error message.
No sequence dictionary found for /home/delta/./ref/hg19_tmp/chr1.fa. Use CreateSequenceDictionary.jar to create a sequence dictionary.
I understood that I should use CreateSequenceDictionary
command, but it is included in picard.jar
, not in CreateSequenceDictionary.jar
. Also, CreatedSequenceDictionary.jar
is not built when I ran the command ./gradlew shadowJar
. It is not a big deal, but should we correct the error message?
I am new to Picard tool suite. So correct me if there are some misunderstandings.
Best