Hi
I would like to obtain snps+genotypes in .vcf format for a number of lymphoblastoid cell lines, part of the hapmap project. Some of them have been sequenced by the 1000genomes project (so I have .vcfs already), however for some no 1000genomes data exists, so I guess I'll have to resort to using Hapmap data.
However the Hapmap "bulk" data is offered in a text format I don't recognise - presumably, vcf hadn't been invented yet?
Are you aware of a tool able to convert hapmap raw variant data to .vcf? The vcf should contain the genotypes, of course, and one column per sample. Your suggestions would be really appreciated.