Hi,
We are doing the benchmark analysis against amplicon sequencing data for 2000 known variants.
Both HC and UG have been tried.
However, it seems that HC take much longer time than UG, which is not acceptable, although HC should be better in calling variants.
I am wondering is there any solution to accelerate the calling process?
One sample analysis:
1. HC
real 138m14.093s
user 147m53.771s
sys 0m48.910s
- UG
real 0m22.982s
user 1m34.687s
sys 0m8.169s